STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1975Zinc carboxypeptidase-related protein. (342 aa)    
Predicted Functional Partners:
SO_1976
Hydrolase alpha/beta fold family.
 
     0.950
SO_1447
Retinol acyltransferase domain protein.
   
    0.701
yfaZ
Outer membrane protein YfaZ.
  
     0.572
kdpD
Two component signal transduction system controlling the osmosenstive K+ channel histidine kinase KdpD.
  
    0.488
tnpA-44
ISSod3 transposase TnpA_ISSod3.
       0.432
pitB
Metal ion-phosphate:proton symporter PitB.
   
    0.429
torE
Transmembrane component of the trimethylamine N-oxide reductase system TorE.
   
    0.429
SO_0066
YfhM family alpha2-macroglobulin.
    
 0.404
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.