STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1978Pyridoxal-phosphate dependent eynzyme. (330 aa)    
Predicted Functional Partners:
nrtR
Transcriptional repressor of nicotinamide riboside utilization NrtR.
       0.608
ompK
Nucleoside-specific outer membrane porin OmpK.
  
    0.569
SO_0136
Membrane protein of unknown function UPF0005 family; Belongs to the BI1 family.
  
     0.462
SO_1977
Inner membrane of unknown function DUF307.
  
    0.453
SO_2076
Uncharacterized protein.
   
    0.429
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
  
    0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.