STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_1997Cold-active zinc metallopeptidase M1 family. (642 aa)    
Predicted Functional Partners:
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
  
    0.546
SO_3539
Peptidase M28D family.
  
 
 0.508
SO_0614
Peptidase S9 family.
  
    0.481
SO_1998
Protein of unknown function DUF3389.
  
    0.475
SO_2198
Peptidase M28 family.
  
 
 
 0.474
SO_2766
Peptidase M28A family.
  
 
 
 0.457
SO_1944
2OG-Fe(II) oxygenase family protein.
  
     0.438
SO_3560
Predicted non-catalytic member of peptidase subfamily M16B.
  
 
   0.432
SO_0321
Putative periplasmic protein of unknown function.
  
    0.428
SO_2494
Peptidase family M2.
  
   
 0.425
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.