Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SO_2017 | htpG | SO_2017 | SO_2016 | Heat shock response protein. | Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.949 |
| SO_2017 | ybaB | SO_2017 | SO_2014 | Heat shock response protein. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.433 |
| acpP | rplM | SO_2775 | SO_3940 | Acyl carrier protein AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.947 |
| acpP | rpmC | SO_2775 | SO_0239 | Acyl carrier protein AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 50S ribosomal protein L29 RpmC; Belongs to the universal ribosomal protein uL29 family. | 0.472 |
| acpP | ybaB | SO_2775 | SO_2014 | Acyl carrier protein AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.589 |
| bamD | ybaB | SO_1880 | SO_2014 | Beta barrel protein translocation component BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.453 |
| dnaX | recR | SO_2013 | SO_2015 | DNA polymerase III gamma and tau subunits DnaX. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.844 |
| dnaX | ybaB | SO_2013 | SO_2014 | DNA polymerase III gamma and tau subunits DnaX. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.925 |
| fliR | ybaB | SO_3216 | SO_2014 | Flagellar export protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.491 |
| htpG | SO_2017 | SO_2016 | SO_2017 | Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity. | Heat shock response protein. | 0.949 |
| htpG | recR | SO_2016 | SO_2015 | Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.556 |
| htpG | ybaB | SO_2016 | SO_2014 | Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.556 |
| recR | dnaX | SO_2015 | SO_2013 | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | DNA polymerase III gamma and tau subunits DnaX. | 0.844 |
| recR | htpG | SO_2015 | SO_2016 | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | Heat shock chaperone HtpG; Molecular chaperone. Has ATPase activity. | 0.556 |
| recR | ybaB | SO_2015 | SO_2014 | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.994 |
| rimP | rplM | SO_1202 | SO_3940 | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.842 |
| rimP | ybaB | SO_1202 | SO_2014 | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | DNA-binding protein YbaB; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. | 0.674 |
| rplM | acpP | SO_3940 | SO_2775 | 50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Acyl carrier protein AcpP; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family. | 0.947 |
| rplM | rimP | SO_3940 | SO_1202 | 50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosome maturation factor RimP; Required for maturation of 30S ribosomal subunits. Belongs to the RimP family. | 0.842 |
| rplM | rpmC | SO_3940 | SO_0239 | 50S ribosomal protein L13 RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L29 RpmC; Belongs to the universal ribosomal protein uL29 family. | 0.998 |
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