STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2045Cation efflux protein CDF family. (394 aa)    
Predicted Functional Partners:
SO_2046
Transcriptional regulator MarR family.
  
  
 0.873
SO_4150
Sulphate transporter.
     
 0.727
SO_1189
Putative periplasmic protein of unknown function DUF2271.
   
  
 0.716
SO_4712
ABC-type transporter ATPase component.
      
 0.711
SO_3185
Enzyme for biosynthesis of dTDP-Qui4N; Belongs to the DegT/DnrJ/EryC1 family.
   
  
 0.652
SO_1190
Putative periplasmic CbiK superfamily protein.
  
  
 0.588
SO_3063
Cation:alanine/glycine transporter AGCS family.
     
 0.588
wbqC
Putative glycine transferase in O-antigen biosynthesis cluster WbqC.
   
  
 0.583
SO_1580
TonB-dependent haem/haemoglobin receptor.
   
  
 0.570
grtP
D-glycerate transporter GrtP.
      
 0.570
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.