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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2047Prolyl oligopeptidase family S9 protein. (697 aa)    
Predicted Functional Partners:
SO_2048
Sulfatase with domain of unknown function DUF1705.
     
 0.951
SO_2049
Diguanylate cyclase.
     
 0.881
lptA
ABC-type lipopolysaccharide export system chaperone component LptA; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm.
   
  
 0.801
SO_4252
Subfamily S9C unassigned peptidase.
  
    0.695
ftsH
ATP-dependent zinc metalloprotease FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
      
 0.514
SO_2045
Cation efflux protein CDF family.
  
    0.436
SO_2046
Transcriptional regulator MarR family.
  
    0.434
dpp4
Periplasmic dipeptidylpeptidase IV Dpp4.
  
   
 0.432
SO_1100
TRAP transporter substrate-binding component; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
    0.418
rflA
Phage P1-related protein in restrction modification operon RflA.
   
    0.418
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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