Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2061Predicted lipoprotein. (112 aa)    
Predicted Functional Partners:
SO_0783
Superfamily I DNA and RNA helicase.
      
 0.964
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
      
 0.803
sspA
Transcpriptional activator SspA; Belongs to the GST superfamily.
      
 0.800
btuB
TonB-dependent vitamin B12 receptor BtuB.
      
 0.669
rplK
50S ribosomal protein L11 RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
      
 0.661
rpmB
50S ribosomal protein L28 RpmB; Belongs to the bacterial ribosomal protein bL28 family.
      
 0.642
SO_2794
Inner membrane protein of unknown function DUF445.
   
    0.421
SO_1374
Acteyltransferase GNAT family.
   
    0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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