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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2064Membrane-anchored YbdH domain protein. (1086 aa)    
Predicted Functional Partners:
SO_2063
Outer membrane lipoprotein.
 
   
 0.950
SO_2062
Putative periplasmic protein of unknown function DUF1318.
 
   
 0.934
SO_2114
Outer membrane protein Omp85 family.
  
 
 0.837
tyrP
Tyrosine transporter TyrP.
  
    0.451
SO_0962
Protein of unknown function DUF3332.
   
    0.429
SO_4002
Two component signal transduction system hybrid histidine kinase/response regulator with PAS sensory domain.
  
    0.419
yrdD
Putative DNA topoisomerase YrdD.
   
    0.400
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.