Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_2110Peptidase family M15. (182 aa)    
Predicted Functional Partners:
SO_2109
Peptidoglycan-binding protein.
 
   
 0.885
SO_3054
Metallo-beta-lactamase family protein.
  
    0.814
SO_1899
Periplasmic protein with peptidoglycan binding domain.
 
   
 0.775
gloB
Hydroxyacylglutathione hydrolase GloB; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
    0.543
SO_3474
Metallo-beta-lactamase family protein.
  
    0.543
ybiS
LD-transpeptidase YbiS.
 
     0.494
SO_0547
Putative outer membrane protein TIGR02001 family.
   
    0.421
ycjX
Protein of unknown function DUF463 YcjX.
  
     0.420
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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