Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_2113Outer membrane protein with carboxy terminal DUF490 domain. (1385 aa)    
Predicted Functional Partners:
SO_2114
Outer membrane protein Omp85 family.
 0.999
bamA
Beta barrel protein translocation component BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
   
 0.674
SO_3772
SH3 domain protein.
 
     0.542
asmA
Outer membrane protein assembly protein AsmA.
 
   
 0.538
iaaA
Bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA.
       0.537
lptD
Lipopolysaccharide export porin LptD; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
  
 0.535
sprT
Protein of unknown function DUF335 SprT; Belongs to the SprT family.
  
     0.507
SO_0306
Outer membrane protein COG4775 family.
 
   
 0.506
gcvR
Glycine cleavage system transcriptional repressor GcvR.
  
     0.472
SO_4011
Protein of unknown function DUF3581.
  
    0.459
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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