Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
SO_2143Aspartate-alanine antiporter. (562 aa)    
Predicted Functional Partners:
SO_1492
Surface bound cyclophilin-type A-like peptidylprolyl cis-trans isomerase lipoprotein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
    0.694
fimA
P pilus subunit FimA.
  
    0.528
SO_4087
ABC-type efflux system permease component 2.
  
     0.465
cobC
Alpha-ribazole-5-phosphate phosphatase CobC.
   
    0.429
yqfB
Putative RNA-binding protein YqfB; Belongs to the UPF0267 family.
   
    0.421
SO_3867
Transcriptional regulator Cro/CI family.
   
    0.421
SO_2022
Uncharacterized protein.
   
    0.413
SO_4089
ABC-type efflux system MFP component.
  
     0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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