Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SO_2151Protein of unknown function DUF58. (362 aa)    
Predicted Functional Partners:
SO_2150
Integral membrane transglutaminase family protein with DUF3488 domain.
 
  
 0.977
SO_2153
AAA+ ATPase MoxR MRP family.
  
 0.887
pilP
PilQ chaperone PilP.
 
     0.754
SO_0033
Peptidoglycan-binding protein.
 
     0.752
pilN
Type IV pilus biogenesis protein PilN.
 
     0.732
pilO
Type IV pilus biogenesis protein PilO.
 
     0.709
fimU
Type IV pilus biogenesis protein FimU.
  
     0.701
SO_0853
PilD processed protein.
  
     0.698
pilM
Type IV pilus biogenesis protein PilM.
  
     0.678
pilQ
Type IV pilus secretin PilQ.
 
     0.633
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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