STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2156O-glycosyl hydrolase family 13. (706 aa)    
Predicted Functional Partners:
susB
Alpha-glucosidase SusB.
   
 0.835
puuP
Putrescine uptake protein PuuP.
   
 0.788
potE
Putrescine:ornithine antiporter PotE; Catalyzes both the uptake and excretion of putrescine. The uptake of putrescine is dependent on the membrane potential and the excretion involves putrescine-ornithine antiporter activity. Belongs to the amino acid-polyamine-organocation (APC) superfamily. Basic amino acid/polyamine antiporter (APA) (TC 2.A.3.2) family.
   
 0.787
yjeH
L-leucine transporter YjeH.
   
 0.787
ptsG
Phosphotransferase system (PTS) glucose-specific IIBC component PtsG.
  
  
 0.771
malT
Putative maltose transporter MalT.
 
  
 0.611
sorB
Sulfite dehydrogenase cytochrome c subunit SorB.
  
    0.577
glgA
Glycogen synthase ADP-glucose transglucosylase GlgA.
  
  
 0.559
SO_3513
Flavin-dependent tryptophan halogenase.
 
    0.557
glgX
Glycogen isoamylase GlgX; Belongs to the glycosyl hydrolase 13 family.
  
  
 0.554
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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