STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yecMProtein of unknown function YecM. (200 aa)    
Predicted Functional Partners:
SO_3047
Protein of unknown function DUF1097.
  
     0.751
trpR
Transcriptional repressor of aromatic amino acid biosynthesis TrpR.
  
     0.735
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
    0.696
SO_2251
Enzyme of unknown function UPF0227; Belongs to the UPF0227 family.
  
     0.650
yejL
Protein of unknown function DUF1414 YejL; Belongs to the UPF0352 family.
  
    0.648
yggL
Protein of unknown function DUF469 YggL.
  
     0.620
hptA
Histidine-containing phosphotransfer domain protein HptA.
  
     0.611
cdd
Cytidine deaminase Cdd; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis.
  
     0.608
SO_2183
LD-transpeptidase ErfK/YbiS/YcfS/YnhG family.
  
    0.602
mtr
High affinity tryptophan transporter Mtr.
  
     0.602
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.