STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2183LD-transpeptidase ErfK/YbiS/YcfS/YnhG family. (171 aa)    
Predicted Functional Partners:
SO_0625
Periplasmic cyctochrome c oxidase regulatory protein.
   
  
 0.920
pabC
Aminodeoxychorismate lyase PabC.
  
  
 0.919
SO_0578
Periplasmic metalloprotease.
      
 0.918
gor
Glutathione-disulfide reductase Gor.
      
 0.910
astB
N-succinylarginine dihydrolase AstB; Catalyzes the hydrolysis of N(2)-succinylarginine into N(2)- succinylornithine, ammonia and CO(2).
   
  
 0.787
ybiS
LD-transpeptidase YbiS.
 
  
 0.735
yecM
Protein of unknown function YecM.
  
    0.602
dacB
D-alanyl-D-alanine carboxypeptidase DacB.
    
 0.540
dacA
D-alanyl-D-alanine carboxypeptidase DacA; Belongs to the peptidase S11 family.
    
 0.523
SO_1899
Periplasmic protein with peptidoglycan binding domain.
  
  
 0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.