STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srtASortase SrtA. (259 aa)    
Predicted Functional Partners:
SO_2195
Inter-alpha-trypsin inhibitor family protein.
 
    0.981
SO_2504
Rhombosortase.
      
 0.941
SO_1000
Rhomboid protease.
   
  
 0.890
SO_4385
Von Willebrand factor type A domain protein.
 
  
 0.884
SO_2192
Two component signal transduction system controlling sortase system histidine kinase.
 
     0.830
SO_2193
Two component signal transduction system controlling sortase system response regulator.
 
    0.819
scpB
Segregation and condensation protein ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
      
 0.819
pdsO
Sortase system OmpA family protein PdsO.
 
    0.797
prpR
Methycitrate-responsive transcriptional regulator of methylisocitrate utilization PrpR.
      
 0.750
speC
Ornithine decarboxylase SpeC; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
      
 0.663
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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