STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hdtRTranscriptional regulator HdfR; Belongs to the LysR transcriptional regulatory family. (286 aa)    
Predicted Functional Partners:
SO_2201
Protein of unknown function DUF413.
 
    0.774
SO_1916
DMSO-responsive transcriptional activator of efflux pump LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.758
SO_4140
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.745
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.741
SO_3757
Transcriptional regulator of bicarbonate utilization LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.736
SO_0701
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.732
SO_4524
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.727
SO_0523
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.715
SO_0839
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.712
lldR
Transcriptional regulator of L-lactate utilization LldR; Belongs to the LysR transcriptional regulatory family.
  
     0.693
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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