STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2254Periplasmic protein of unknown function DUF2803. (332 aa)    
Predicted Functional Partners:
mfd
Transcription-repair coupling factor Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.800
SO_2872
Membrane protein of unknown function DUF2069.
  
     0.731
gspN
T2aSS secretion system protein GspN.
  
     0.675
SO_4182
ATP-dependent protease La (LON) domain protein.
  
     0.658
SO_2839
Protein of unknown function DUF3010.
  
    0.647
ampE
AmpD signaling modulator AmpE.
  
    0.617
SO_2256
Uncharacterized protein.
  
    0.603
SO_0404
Zinc dependent metalloprotease domain lipoprotein.
  
     0.554
mshN
MSHA biogenesis protein MshN.
  
     0.549
SO_3905
Predicted outer membrane protein.
  
     0.547
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.