Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
SO_2280drug:H+ antiporter DHA1 family. (407 aa)    
Predicted Functional Partners:
SO_1190
Putative periplasmic CbiK superfamily protein.
      
 0.831
SO_1188
Inner membrane protein with PepSY TM helix.
   
  
 0.809
SO_1580
TonB-dependent haem/haemoglobin receptor.
      
 0.809
SO_4743
TonB-dependent siderophore receptor.
   
  
 0.805
SO_3025
Periplasmic siderophore cleavage esterase IroE family.
   
  
 0.800
SO_3062
Predicted inner membrane protein.
      
 0.800
putA
TonB-dependent ferric putrebactin siderophore receptor PutA.
   
  
 0.756
pubC
NTP-dependent putrebactin synthetase PubC.
     
 0.707
SO_1189
Putative periplasmic protein of unknown function DUF2271.
      
 0.696
ftn
Ferritin Ftn; Iron-storage protein.
      
 0.695
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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