STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2282Bifunctional transcriptional repressor of amino acid efflux GntR family / aminotransferase. (452 aa)    
Predicted Functional Partners:
ybgI
Protein YbgI.
   
    0.578
napF
Nitrate reductase (NapA) maturase NapF; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
    
   0.514
SO_0400
Putative quinol monooxygenase.
 
    0.505
pheA
Multifunctional chorismate mutase P/prephenate dehydratase/DAHP synthetase PheA.
     
 0.471
iaaA
Bifunctional isoaspartyl dipeptidase / l-asparaginase IaaA.
  
 
 0.460
prlS
Proline-responsive two component signal transduction system hybrid histidine kinase/resposne regulator PrlS.
   
 
 0.451
tnpA-65
ISSod3 transposase TnpA_ISSod3.
       0.442
thrA
Bifunctional aspartokinase I / homoserine dehydrogenase I ThrA; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.441
metL
Bifunctional aspartokinase II/homoserine dehydrogenase methionine-sensitive MetL; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.441
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
     
 0.421
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.