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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase TrxB. (317 aa)    
Predicted Functional Partners:
trxA
Thioredoxin 1 TrxA; Belongs to the thioredoxin family.
 
 0.999
sufS
Cysteine desulfurase SufS; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.939
ahpC
Alkyl hydroperoxide reductase peroxiredoxin component AhpC; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.921
selD
Selenophosphate synthase SelD; Synthesizes selenophosphate from selenide and ATP.
   
 
 0.918
mdeA
Methionine gamma-lyase MdeA.
   
 
 0.911
tsaA
Peroxiredoxin TsaA.
  
 
 0.905
trxC
Thioredoxin 2 TrxC; Belongs to the thioredoxin family.
 
 
 0.877
SO_2017
Heat shock response protein.
  
 
 0.852
gshA
Glutamate--cysteine ligase GshA; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
   
  
 0.824
katB
Catalase HPII KatB; Belongs to the catalase family.
   
 
 0.822
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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