STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ecoTSerine protease inhibitor ecotin EcoT; General inhibitor of family S1 serine proteases. (183 aa)    
Predicted Functional Partners:
SO_3571
Periplasmic protein of unknown function DUF2057; Belongs to the UPF0319 family.
   
    0.785
bpfA
Biofilm-promoting protein BpfA.
      
 0.750
gst
Glutathione S-transferase Gst.
      
 0.669
gst-2
Glutathione S-transferase Gst.
   
  
 0.666
yggE
Periplasmic protein associated with oxidative stress YggE.
   
    0.602
cyaB
Cytoplasmic adenylate cyclase CyaB.
  
   
 0.530
SO_0056
ABC-type transport system substrate binding component.
  
  
 0.505
SO_1486
4-hydroxybenzoyl-CoA thioesterase family protein.
  
    0.429
SO_3261
Polysaccharide biosynthesis related-protein.
   
    0.413
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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