Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ybfERibbon-helix-helix protein repressor CopG family YbfE. (90 aa)    
Predicted Functional Partners:
fldA
Flavodoxin FldA; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
 
  
 0.970
yebG
UV induced SOS regulon protein YebG.
  
   
 0.826
seqA
Negative regulator of DNA replication SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
    0.816
SO_2332
Protein of unknown function DUF2788.
       0.814
fur
Transcriptional repressor of iron homeostasis Fur; Belongs to the Fur family.
      0.766
ilvM
Acetolactate synthase II small subunit IlvM.
  
     0.766
SO_3811
Family 16 outer membrane lipoprotein of unknown function.
  
    0.755
gsk
Inosine-guanosine kinase Gsk.
  
    0.751
SO_3848
Cytoplasmic protein of unknown function.
   
    0.694
bolA
Global transcriptional regulator BolA; Belongs to the BolA/IbaG family.
   
  
 0.667
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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