STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccoICbb3-type cytochrome oxidase-associated copper translocating P-ATPase CcoI. (799 aa)    
Predicted Functional Partners:
SO_2357
Cbb3-type cytochrome oxidase assembly protein disulfide bond oxidoreductase DsbD family.
 
   
 0.935
ccoS
Cbb3-type cytochrome oxidase assembly protein CcoS.
 
  
 0.895
ccoP
Cbb3-type cytochrome c oxidase subunit III CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
   
 0.893
ccoO
Cbb3-type cytochrome c oxidase subunit II CcoO.
 
   
 0.889
ccoH
Cbb3-type cytochrome oxidase assembly protein CcoH.
 
    0.887
SO_1407
Hg(II) uptake system substrate-binding component MerP family.
  
 
 0.884
ccoN
Cbb3-type cytochrome c oxidase subunit I CcoN; Belongs to the heme-copper respiratory oxidase family.
 
   
 0.878
ccoG
Cbb3-type cytochrome oxidase assembly protein CcoG.
 
  
 0.737
SO_3662
Inner membrane 4Fe-4S ferredoxin.
 
  
 0.727
fnr
Oxygen-responsive transcriptional regulator of anaerobiosis response Fnr; Regulates anaerobic growth on fumarate, nitrite, Fe(3+), TMAO, DMSO, thiosulfate and sulfite, but not on nitrate nor Mn(4+).
     
 0.695
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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