STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tusDtRNA 2-thiouridine synthesizing protein D subunit TusD. (130 aa)    
Predicted Functional Partners:
tusC
tRNA 2-thiouridine synthesizing protein C subunit TusC; Belongs to the DsrF/TusC family.
 
 0.999
tusB
tRNA 2-thiouridine synthesizing protein B subunit TusB.
  
 0.999
tusE
tRNA 2-thiouridine synthesizing protein sulfur mediator TusE; Part of a sulfur-relay system.
 
 
 0.996
tusA
tRNA 2-thiouridine synthesizing protein TusA; Sulfur carrier protein which probably makes part of a sulfur- relay system; Belongs to the sulfur carrier protein TusA family.
 
 
 0.972
adhB
Alcohol dehydrogenase II AdhB.
      
 0.735
SO_2868
SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
  
 0.696
yccA
Integral membrane FtsH interacting protein YccA; Belongs to the BI1 family.
       0.647
yedF
SirA family protein YedF; Belongs to the sulfur carrier protein TusA family.
  
  
 0.600
fccA
Periplasmic fumarate reductase FccA; Catalyzes fumarate reduction using artificial electron donors such as methyl viologen. The physiological reductant is unknown, but evidence indicates that flavocytochrome c participates in electron transfer from formate to fumarate and possibly also to trimethylamine oxide (TMAO). This enzyme is essentially unidirectional (By similarity); In the C-terminal section; belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
  
 0.502
SO_2935
Oxidoreductase short-chain dehydrogenase/reductase family.
  
     0.414
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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