STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tusEtRNA 2-thiouridine synthesizing protein sulfur mediator TusE; Part of a sulfur-relay system. (112 aa)    
Predicted Functional Partners:
tusD
tRNA 2-thiouridine synthesizing protein D subunit TusD.
 
 
 0.998
tusC
tRNA 2-thiouridine synthesizing protein C subunit TusC; Belongs to the DsrF/TusC family.
 
  
 0.977
tusB
tRNA 2-thiouridine synthesizing protein B subunit TusB.
  
 
 0.958
trmU
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
   
 0.956
yccA
Integral membrane FtsH interacting protein YccA; Belongs to the BI1 family.
    
 0.872
rlmI
23S rRNA (cytosine1962-C5)-methyltransferase RlmI; Specifically methylates the cytosine at position 1962 (m5C1962) of 23S rRNA.
 
    0.681
ftn
Ferritin Ftn; Iron-storage protein.
      
 0.668
yidD
Membrane insertion associated protein YidD; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
      
 0.667
sohB
Inner membrane anchored endopeptidase SohB.
      
 0.667
sbcB
Exodeoxyribonuclease I SbcB.
  
  
 0.489
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.