STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrDMultidrug efflux protein EmrD. (414 aa)    
Predicted Functional Partners:
SO_3771
Inorganic phosphate transporter PiT family.
      
 0.573
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
  
  
 0.551
SO_3659
Thiol:disulfide interchange protein.
  
  
 0.537
SO_3694
ABC-type macrolide family export system MFP component.
  
 
 0.494
pitB
Metal ion-phosphate:proton symporter PitB.
   
  
 0.473
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.470
SO_2906
Tellurite-resistance/dicarboxylate transporter (TDT) family protein.
      
 0.456
SO_2460
Uncharacterized protein.
      
 0.454
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.452
SO_4014
HAE1 family effllux pump permease component; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
    
 
 0.426
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.