Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
emrDMultidrug efflux protein EmrD. (414 aa)    
Predicted Functional Partners:
ampC
Class C beta-lactamase AmpC.
     
 0.623
rmrB
Multidrug efflux pump permease component RmrB; Belongs to the major facilitator superfamily.
  
   
 0.586
emrD3
Multidrug efflux pump EmrD3.
  
   
0.515
tolC
Global secretion system secretin TolC.
   
 
 0.510
SO_3659
Thiol:disulfide interchange protein.
  
  
 0.506
macC
ABC-type macrolide export system secretin component MacC.
   
 
 0.491
btuC
ABC-type cobalamin uptake system permease component BtuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
   
 0.479
hmuC
ABC-type hemin uptake system permease component HmuC; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
   
 0.473
SO_3694
ABC-type macrolide family export system MFP component.
   
 
 0.471
SO_2906
Tellurite-resistance/dicarboxylate transporter (TDT) family protein.
      
 0.467
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.