STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC-2Aspartate aminotransferase AspC. (396 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase PhhA.
  
 
 0.989
hppD
4-hydroxyphenylpyruvate dioxygenase HppD.
  
 
 0.984
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
  
 
 0.972
pheA
Multifunctional chorismate mutase P/prephenate dehydratase/DAHP synthetase PheA.
  
 
 0.945
mdh
NAD dependent malate dehydrogenase Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate.
   
 0.930
sseA
Mercaptopyruvate sulfurtransferase SseA.
  
 
 0.925
argA
Amino-acid acetyltransferase ArgA; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.925
yfbQ
PLP-dependent aminotransferase YfbQ.
   
 0.922
argG
Argininosuccinate synthase ArgG; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
   
 
 0.918
gltB
NADPH-dependent glutamate synthase large subunit GltB.
  
 
 0.916
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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