STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2423Putative membrane protein. (105 aa)    
Predicted Functional Partners:
SO_2422
Protein of unknown function DUF1315.
  
  
 0.966
SO_2424
Zinc carboxypeptidase domain protein.
     
 0.961
SO_1189
Putative periplasmic protein of unknown function DUF2271.
      
 0.800
SO_2426
Two component signal transduction system response regulator.
  
  
 0.710
ansA
L-asparaginase I AnsA.
      
 0.696
SO_1190
Putative periplasmic CbiK superfamily protein.
      
 0.670
SO_1188
Inner membrane protein with PepSY TM helix.
      
 0.662
SO_2427
ArgR-regulated TonB-dependent receptor.
     
 0.643
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.