STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2452Alcohol dehydrogenase zinc-containing. (314 aa)    
Predicted Functional Partners:
SO_0640
Putative NAD(P)H quinone oxidoreductase PIG3 family.
 
     0.696
sye1
NADH:flavin oxidoreductase Sye1.
  
  
 0.576
sye2
NAD(P)H:flavin oxidoreductase Sye2.
  
  
 0.559
pfaA
Omega-3 polyunsaturated fatty acid synthase subunit PfaA.
  
 
 0.495
pfaC
Multi-domain beta-ketoacyl synthase PfaC; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
 
 0.455
emrD3
Multidrug efflux pump EmrD3.
  
    0.450
rlmF
23S rRNA (adenine1618-N6)-methyltransferase RlmF; Specifically methylates the adenine in position 1618 of 23S rRNA.
   
    0.443
SO_2451
SAM-dependent methyltransferase; Belongs to the methyltransferase superfamily.
  
    0.438
hipB
Toxin-antitoxin system antidote transcriptional repressor Xre family; Antitoxin component of a type II toxin-antitoxin (TA) system. Neutralizes the toxic effect of cognate toxin HipA; overexpression in wild-type or a hipAB deletion temporarily inhibits cell growth. Binds operator DNA; in the ternary phosphoserine-HipA-HipB-DNA complex the DNA is bent about 125 degrees.
   
    0.429
accADCB
acetyl-CoA carboxylase multifunctional enzyme AccADCB.
     
 0.415
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.