STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yafCTranscriptional regulator YafC; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
SO_0989
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.739
SO_4542
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.733
SO_1907
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.660
SO_4140
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.617
trpI
Transcriptional activator of tryptophan biosynthesis TrpI; Belongs to the LysR transcriptional regulatory family.
  
    0.589
SO_0997
Transcriptional regulator LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.567
oxyR
Transcriptional regulator of oxidative stress OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.562
hdtR
Transcriptional regulator HdfR; Belongs to the LysR transcriptional regulatory family.
  
    0.535
sye2
NAD(P)H:flavin oxidoreductase Sye2.
  
    0.532
ydhB
Transcriptional regulator YdhB; Belongs to the LysR transcriptional regulatory family.
  
     0.528
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.