STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbQPLP-dependent aminotransferase YfbQ. (404 aa)    
Predicted Functional Partners:
agxT
Serine-pyruvate aminotransferase AgxT.
  
 0.950
ldh
Leucine dehydrogenase Ldh.
  
 
 0.935
ilvD
Dihydroxy-acid dehydratase IlvD; Belongs to the IlvD/Edd family.
  
 
 0.927
ilvE
Branched-chain-amino-acid transaminase IlvE.
  
 
 0.922
aspC-2
Aspartate aminotransferase AspC.
   
 0.922
argA
Amino-acid acetyltransferase ArgA; Belongs to the acetyltransferase family. ArgA subfamily.
  
 
 0.920
ald
Alanine dehydrogenase Ald; Belongs to the AlaDH/PNT family.
     
 0.917
leuA
2-isopropylmalate synthase LeuA; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
  
 
 0.917
gdh
Glutamate dehydrogenase (NAD+) Gdh.
  
 
 0.915
alr
Alanine racemase biosynthetic Alr; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.874
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.