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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2518Uncharacterized protein. (260 aa)    
Predicted Functional Partners:
SO_2803
DNA internalization-related competance protein ComEC/Rec2 family.
  
  
 0.733
flgT
Flagella assembly protein FlgT.
  
     0.696
SO_4008
Putative recombination regulator protein DUF3584 family.
 
   
 0.688
SO_4006
Uncharacterized protein.
 
     0.665
SO_2119
Protein phosphatase with response regulator reciever modulation.
  
  
 0.660
SO_2798
Membrane protein COG3235 family.
  
    0.631
tyrA
Bifunctional chorismate mutase T/prephenate dehydrogenase TyrA.
  
  
 0.629
dprA
DNA processing protein DprA.
  
 
 0.622
nagA
N-acetylglucosamine-6-phosphate deacetylase NagA; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
  
    0.619
SO_4007
Uncharacterized protein.
  
     0.614
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.