Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2520Signalling protein with GGDEF domain. (324 aa)    
Predicted Functional Partners:
SO_2519
Transcriptional regulator AraC family.
 
    0.862
SO_3700
Bifunctional periplasmic substrate binding protein/cytoplasmic diguanylate cyclase.
  
    0.853
SO_0928
Diguanylate cyclase.
  
    0.810
SO_1055
Diguanylate cyclase with PAS and GAF sensory domains.
 
 
 0.810
SO_1255
Bifunctional diguanylate cyclase/phosphodiesterase.
  
    0.804
SO_2498
Bifunctional diguanylate cyclase/phosphodiesterase with GAF and PAS sensory domains.
 
  
 0.803
SO_0796
Diguanylate cyclase.
  
    0.802
SO_3084
Bifunctional diguanylate cyclase/phosphodiesterase with PAS sensory domain.
 
 
 0.800
SO_4552
Bifunctional diguanylate cyclase with PAS sensory domain/signalling protein with EAL domain.
 
 
 0.797
SO_1500
Bifunctional diguanylate cyclase with PAS sensory domains/diguanylate phosphodiesterase.
 
 
 0.793
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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