Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phySBeta-propeller phytase PhyS. (661 aa)    
Predicted Functional Partners:
SO_2523
TonB-dependent phytase receptor.
 
    0.946
phoD
Ca(2+)-dependent phospholipase D PhoD.
 
   
 0.919
phoX
Monomeric alkaline phosphatase PhoX.
  
  
 0.859
ptpA
Low molecular weight phosphotyrosine protein phosphatase PtpA.
   
  
 0.805
phoA
Periplasmic alkaline phosphatase PhoA; Belongs to the alkaline phosphatase family.
 
   
 0.785
SO_3514
TonB-dependent chitooligosaccharide receptor.
 
    0.761
dnrN
Repair of iron centers (RIC) protein DnrN; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family.
   
    0.602
SO_2520
Signalling protein with GGDEF domain.
 
    0.586
cheC-2
Chemotaxis signal transduction system inhibitor of MCP methylation CheC.
  
    0.481
SO_3513
Flavin-dependent tryptophan halogenase.
  
    0.470
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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