Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_2533Periplasmic protein of unknown function DUF3108. (266 aa)    
Predicted Functional Partners:
SO_0867
Collagenolytic serine protease; Belongs to the peptidase S8 family.
  
 
 0.743
sapSH
Extracellular serine alkaline protease SapSH.
  
 
 0.704
SO_2878
Putative periplasmic protein of unknown function DUF2066.
 
    0.658
SO_2396
Protein of unknown function DUF2058.
  
     0.628
fimV
Type IV pilus assembly protein FimV.
  
     0.617
SO_0776
YecA family protein; Belongs to the UPF0149 family.
  
    0.564
scyA
Periplasmic monoheme cytochrome c5 ScyA.
  
     0.556
gspL
T2aSSsecretion system inner membrane platform protein GspL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.537
SO_4612
Uncharacterized protein.
  
    0.516
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.
  
     0.504
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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