Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SO_2542Signaling protein with FIST domain. (395 aa)    
Predicted Functional Partners:
SO_2544
Two component signal transduction system hybrid histidine kinase/response regulator with Hpt domain.
 
    0.837
SO_2543
Two component signal transduction system histidine kinase.
 
    0.827
SO_2541
Two component signal transduction system response regulator.
 
  
 0.820
SO_2540
Two component signal transduction system response regulator.
 
    0.739
SO_2538
Two component signal transduction system response regulator.
 
    0.652
SO_2539
Two component signal transduction system response regulator with cyclic diguanylate phosphodiesterase activity and PAS sensory domain.
  
    0.600
adhB
Alcohol dehydrogenase II AdhB.
      0.523
SO_3480
Cold-active protein-tyrosine phosphatase.
  
     0.431
SO_2127
Diguanylate cyclase with response regulator receiver modulation.
  
    0.423
SO_0312
Outer membrane porin.
  
    0.402
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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