STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
asmAOuter membrane protein assembly protein AsmA. (606 aa)    
Predicted Functional Partners:
SO_2565
Intracellular proteinase inhibitor domain protein.
       0.773
SO_2567
Rra-like regulator of RNAse E; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
  
    0.654
aggA
Type I protein secretion system secretin component AggA.
  
  
 0.530
SO_2113
Outer membrane protein with carboxy terminal DUF490 domain.
 
   
 0.449
aggB
Type I protein secretion system MFP component AggB.
  
    0.448
hemY
Protoheme synthesis protein HemY.
 
    0.434
mltB
Lytic murein transglycosylase B MltB.
  
    0.412
SO_2114
Outer membrane protein Omp85 family.
  
   
 0.410
SO_4322
T1SS associated periplasmic transglutaminase-like cysteine proteinase.
  
    0.406
SO_2569
Putative cytoplasmic protein.
       0.405
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.