Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
SO_2583Methyltransferase. (270 aa)    
Predicted Functional Partners:
SO_1822
TonB-dependent receptor.
  
     0.739
SO_2582
Peptidase S33 family.
  
    0.722
SO_1309
TonB-dependent receptor.
  
     0.692
maf
Motility accessory factor Maf.
      
 0.690
SO_2469
TonB-dependent receptor.
  
     0.663
SO_3273
Motility accessory factor Maf family.
      
 0.662
SO_2427
ArgR-regulated TonB-dependent receptor.
  
     0.654
SO_2907
ArgR-regulated TonB-dependent receptor.
  
    0.650
SO_2715
Thiamine-regulated TonB-dependent receptor.
  
     0.607
SO_2523
TonB-dependent phytase receptor.
  
     0.585
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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