Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
SO_2594MMPL family efflux pump. (771 aa)    
Predicted Functional Partners:
SO_2595
BNR repeat protein.
 
  
 0.980
SO_2596
Putative periplasmic protein of unknown function DUF1329.
 
  
 0.927
SO_2597
Outer membrane protein of unknown function DUF1302.
 
    0.920
gdh
Glutamate dehydrogenase (NAD+) Gdh.
       0.532
SO_3611
AAA ATPase family protein.
   
    0.511
SO_4612
Uncharacterized protein.
  
     0.446
SO_3776
Integral membrane protein of unknown function DUF599.
  
     0.445
pyrD
Dihydroorotate dehydrogenase PyrD; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.412
SO_3200
Putative membrane anchored protein of unknown function DUF2802.
  
     0.403
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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