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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2596Putative periplasmic protein of unknown function DUF1329. (454 aa)    
Predicted Functional Partners:
SO_2597
Outer membrane protein of unknown function DUF1302.
 
  
 0.994
SO_2595
BNR repeat protein.
  
 0.971
SO_2594
MMPL family efflux pump.
 
  
 0.917
lpp
Murein lipoprotein Lpp.
    
 
 0.737
SO_2934
Extracellular lipase Pla-1/cef family.
 
    0.699
macB
ABC-type macrolide export system bifunctional ATPase and permease component MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
   
 
 0.587
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
    
   0.586
SO_3776
Integral membrane protein of unknown function DUF599.
  
     0.503
attFG
ABC-type export system permease component AttFG.
   
 
 0.479
lolE
ABC-type lipoprotein release system permease component LolE.
   
 
 0.479
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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