STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2597Outer membrane protein of unknown function DUF1302. (680 aa)    
Predicted Functional Partners:
SO_2596
Putative periplasmic protein of unknown function DUF1329.
 
  
 0.994
SO_2595
BNR repeat protein.
 
    0.967
SO_2594
MMPL family efflux pump.
 
    0.904
SO_2934
Extracellular lipase Pla-1/cef family.
 
    0.776
SO_1829
Putative Zn-dependent protease associated with TonB2 energy transduction system.
  
     0.664
SO_2007
Putative periplasmic low complexity protein.
  
     0.569
SO_3762
Membrane protein of unknown function DUF350.
  
    0.524
SO_0554
Periplasmic protein of unknown function DUF3016.
  
     0.499
SO_4612
Uncharacterized protein.
  
    0.498
flgM
Flagellar biosynthesis anti-sigma factor FlgM.
  
     0.493
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.