Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SO_2607Putative nucleoside transporter. (408 aa)    
Predicted Functional Partners:
argW
Putative arginine uptake porter ArgW.
  
  
 0.797
SO_0823
Membrane-associated zinc metalloprotease M50B family.
  
  
 0.785
pbpG
D-alanyl-D-alanine endopeptidase PbpG; Belongs to the peptidase S11 family.
  
  
 0.659
dacA
D-alanyl-D-alanine carboxypeptidase DacA; Belongs to the peptidase S11 family.
  
  
 0.659
rsmF
16S rRNA (cytosine1407-C5)-methyltransferase RsmF; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
       0.648
SO_2884
SpoVR family protein.
  
  
 0.620
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
 
  
 0.585
rnfC
Ion (H+ or Na+)-translocating NADH:ferredoxin oxidoreductase subunit RnfC; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfC subfamily.
      
 0.546
SO_2584
Membrane zinc metalloprotease.
  
  
 0.534
speC
Ornithine decarboxylase SpeC; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.519
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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