STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2607Putative nucleoside transporter. (408 aa)    
Predicted Functional Partners:
argW
Putative arginine uptake porter ArgW.
  
  
 0.722
SO_0823
Membrane-associated zinc metalloprotease M50B family.
  
  
 0.697
pbpG
D-alanyl-D-alanine endopeptidase PbpG; Belongs to the peptidase S11 family.
  
  
 0.643
dacA
D-alanyl-D-alanine carboxypeptidase DacA; Belongs to the peptidase S11 family.
  
  
 0.643
rsmF
16S rRNA (cytosine1407-C5)-methyltransferase RsmF; Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA.
       0.603
SO_2584
Membrane zinc metalloprotease.
  
  
 0.571
amiB
N-acetylmuramoyl-L-alanine amidase AmiB.
 
   
 0.484
SO_2884
SpoVR family protein.
  
  
 0.478
SO_1570
7TM intracellular signalling protein with GGDEF domain.
   
    0.443
ribD
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.416
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.