SO_2611 protein (Shewanella oneidensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SO_2611

c-di-GMP-binding protein. (108 aa)

Predicted Functional Partners:

pilM

0.872

holB

0.845

SO_2507

0.844

pilN

0.832

pilP

0.830

pilO

0.825

pilQ

0.823

tmk

0.822

yceG

0.822

pabC

0.822

Your Current Organism:

Shewanella oneidensis

NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SO_2507	SO_2611	SO_2507	SO_2611	Bifunctional diguanylate cyclase/phosphodiesterase.	c-di-GMP-binding protein.	0.844
SO_2611	SO_2507	SO_2611	SO_2507	c-di-GMP-binding protein.	Bifunctional diguanylate cyclase/phosphodiesterase.	0.844
SO_2611	holB	SO_2611	SO_2612	c-di-GMP-binding protein.	DNA polymerase III delta' subunit HolB.	0.845
SO_2611	pabC	SO_2611	SO_2615	c-di-GMP-binding protein.	Aminodeoxychorismate lyase PabC.	0.822
SO_2611	pilM	SO_2611	SO_0281	c-di-GMP-binding protein.	Type IV pilus biogenesis protein PilM.	0.872
SO_2611	pilN	SO_2611	SO_0282	c-di-GMP-binding protein.	Type IV pilus biogenesis protein PilN.	0.832
SO_2611	pilO	SO_2611	SO_0283	c-di-GMP-binding protein.	Type IV pilus biogenesis protein PilO.	0.825
SO_2611	pilP	SO_2611	SO_0284	c-di-GMP-binding protein.	PilQ chaperone PilP.	0.830
SO_2611	pilQ	SO_2611	SO_0285	c-di-GMP-binding protein.	Type IV pilus secretin PilQ.	0.823
SO_2611	tmk	SO_2611	SO_2613	c-di-GMP-binding protein.	Thymidylate kinase Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.822
SO_2611	yceG	SO_2611	SO_2614	c-di-GMP-binding protein.	Protein YceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.822
holB	SO_2611	SO_2612	SO_2611	DNA polymerase III delta' subunit HolB.	c-di-GMP-binding protein.	0.845
holB	pabC	SO_2612	SO_2615	DNA polymerase III delta' subunit HolB.	Aminodeoxychorismate lyase PabC.	0.893
holB	tmk	SO_2612	SO_2613	DNA polymerase III delta' subunit HolB.	Thymidylate kinase Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.966
holB	yceG	SO_2612	SO_2614	DNA polymerase III delta' subunit HolB.	Protein YceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.914
pabC	SO_2611	SO_2615	SO_2611	Aminodeoxychorismate lyase PabC.	c-di-GMP-binding protein.	0.822
pabC	holB	SO_2615	SO_2612	Aminodeoxychorismate lyase PabC.	DNA polymerase III delta' subunit HolB.	0.893
pabC	tmk	SO_2615	SO_2613	Aminodeoxychorismate lyase PabC.	Thymidylate kinase Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.	0.943
pabC	yceG	SO_2615	SO_2614	Aminodeoxychorismate lyase PabC.	Protein YceG; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.	0.985
pilM	SO_2611	SO_0281	SO_2611	Type IV pilus biogenesis protein PilM.	c-di-GMP-binding protein.	0.872

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Textmining

Co-occurrence

Databases

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About