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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybgIProtein YbgI. (250 aa)    
Predicted Functional Partners:
SO_3490
Protein of unknown function DUF88.
  
  
 0.918
SO_1653
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
     
 0.890
SO_4174
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
     
 0.890
nlpI
Globular tetratricopeptide repeat containing lipoprotein NlpI; May be involved in cell division.
   
    0.841
aguA
Agmatine deiminase AguA.
     
 0.795
SO_4374
Phenylalanine/tyrosine ammonia-lyase.
      
 0.730
trmK
tRNA (adenine22-N1)-methyltransferase TrmK.
  
  
 0.673
rmuC
DNA recombination protein RmuC.
      
 0.639
SO_2622
Outer membrane protein SlyB-like protein.
  
    0.629
SO_2282
Bifunctional transcriptional repressor of amino acid efflux GntR family / aminotransferase.
   
    0.578
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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