Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ybgIProtein YbgI. (250 aa)    
Predicted Functional Partners:
SO_3490
Protein of unknown function DUF88.
  
  
 0.963
SO_1653
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
     
 0.940
SO_4174
dTDP-4-dehydrorhamnose reductase family; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
     
 0.940
nlpI
Globular tetratricopeptide repeat containing lipoprotein NlpI; May be involved in cell division.
   
    0.851
aguA
Agmatine deiminase AguA.
     
 0.811
SO_4374
Phenylalanine/tyrosine ammonia-lyase.
      
 0.779
rmuC
DNA recombination protein RmuC.
      
 0.663
SO_3057
Phenylalanine/histidine ammonia-lyase family protein.
      
 0.663
trmK
tRNA (adenine22-N1)-methyltransferase TrmK.
  
  
 0.643
SO_2622
Outer membrane protein SlyB-like protein.
  
    0.635
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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