STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SO_2622Outer membrane protein SlyB-like protein. (156 aa)    
Predicted Functional Partners:
ybgI
Protein YbgI.
  
    0.629
SO_0835
Putative periplasmic peptidase C15 superfamily.
  
  
 0.622
aat
leucyl/phenylalanyl-tRNA--protein transferase Aat; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine.
  
    0.616
bpt
leucyl-tRNA-protein transferase Bpt; Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate. Belongs to the R-transferase family. Bpt subfamily.
  
    0.616
bamA
Beta barrel protein translocation component BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.584
SO_1482
TonB-dependent receptor.
  
   
 0.569
raiA
Ribosome-associated inhibitor A RaiA.
  
    0.567
SO_1060
TIGR02722 family lipoprotein.
 
    0.564
SO_3545
Outer membrane porin; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
  
 0.563
SO_0306
Outer membrane protein COG4775 family.
  
 
 0.541
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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