STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
icdIsocitrate dehydrogenase NADP-dependent Icd; Belongs to the monomeric-type IDH family. (741 aa)    
Predicted Functional Partners:
acnB
Aconitate hydratase AcnB; Belongs to the aconitase/IPM isomerase family.
 
 
 0.971
mdh
NAD dependent malate dehydrogenase Mdh; Catalyzes the reversible oxidation of malate to oxaloacetate.
  
  
 0.956
SO_1538
Isocitrate dehydrogenase NAD-dependent.
    
 0.947
sucA
2-oxoglutarate dehydrogenase complex dehydrogenase E1 component SucA.
   
 
 0.926
gltB
NADPH-dependent glutamate synthase large subunit GltB.
   
 
 0.876
purB
Adenylosuccinate lyase PurB; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
  0.857
gdh
Glutamate dehydrogenase (NAD+) Gdh.
   
 
 0.819
yfbQ
PLP-dependent aminotransferase YfbQ.
 
 
 
  0.814
argH
Argininosuccinate lyase ArgH.
     
 0.807
aspC-2
Aspartate aminotransferase AspC.
   
 
  0.807
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.