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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CMu phage transcriptional regulator Cro/CI family C. (248 aa)    
Predicted Functional Partners:
tnpA-74
Mu phage transposase OrfA TnpA_MuSo2.
 
     0.835
H
Lambda phage tail length tape meausure protein H.
  
  
 0.830
ner
Mu phage transcriptional regulator Ner.
 
     0.822
SO_2744
Helicase.
  
    0.802
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
 
     0.792
gemA-2
Mu phage host gene modulation protein GemA.
 
     0.760
gpF-2
Mu phage uncharacterized protein GpF.
 
     0.734
gpV
Mu phage baseplate assembly protein GpV.
 
     0.728
gpH
Mu phage portal protein GpH.
 
     0.719
gpN
Mu phage DNA circulation protein GpN.
 
     0.711
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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