STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nerMu phage transcriptional regulator Ner. (74 aa)    
Predicted Functional Partners:
tnpA-74
Mu phage transposase OrfA TnpA_MuSo2.
 
    0.947
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
 
  
 0.913
SO_2660
Mu phage protein of unknown function DUF3164.
 
    0.890
C
Mu phage transcriptional regulator Cro/CI family C.
 
     0.822
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.822
gpH
Mu phage portal protein GpH.
 
  
 0.788
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.783
SO_2689
Mu phage protein of unknown function DUF1320.
 
    0.777
SO_0648
Mu phage protein of unknown function DUF3164.
 
    0.765
gpE-2
Mu phage large terminase subunit GpE.
 
    0.765
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.