Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpA-74Mu phage transposase OrfA TnpA_MuSo2. (669 aa)    
Predicted Functional Partners:
tnpB
Mu phage transposase OrfB TnpB_MuSo2.
 
 
 0.981
ner
Mu phage transcriptional regulator Ner.
 
    0.945
SO_2660
Mu phage protein of unknown function DUF3164.
 
    0.910
gemA-2
Mu phage host gene modulation protein GemA.
 
    0.884
gpT
Mu phage major head subunit GpT.
 
  
 0.843
gpH
Mu phage portal protein GpH.
 
  
 0.837
C
Mu phage transcriptional regulator Cro/CI family C.
 
     0.834
gpF-2
Mu phage uncharacterized protein GpF.
 
    0.826
gpE-2
Mu phage large terminase subunit GpE.
 
    0.825
gp26-2
Mu phage uncharacterized protein Gp26.
 
     0.820
Your Current Organism:
Shewanella oneidensis
NCBI taxonomy Id: 211586
Other names: S. oneidensis MR-1, Shewanella oneidensis ATCC 700550, Shewanella oneidensis MR-1, Shewanella oneidensis str. MR-1, Shewanella oneidensis strain MR-1, Shewanella sp. MR-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.